Microarray data analysis and mining.
نویسندگان
چکیده
DNA microarray is an innovative technology for obtaining information on gene function. Because it is a high-throughput method, computational tools are essential in data analysis and mining to extract the knowledge from experimental results. Filtering procedures and statistical approaches are frequently combined to identify differentially expressed genes. However, obtaining a list of differentially expressed genes is only the starting point because an important step is the integration of differential expression profiles in a biological context, which is a hot topic in data mining. In this chapter an integrated approach of filtering and statistical validation to select trustable differentially expressed genes is described together with a brief introduction on data mining focusing on the classification of co-regulated genes on the basis of their biological function.
منابع مشابه
تحلیل تصاویر ریزآرایه به منظور تشخیص نوع سرطان سینه
Background: Microarray technology is a powerful tool to study and analyze the behavior of thousands of genes simultaneously. Images of microarray have an important role in the detection and treatment of diseases. The aim of this study is to provide an automatic method for the extraction and analysis of microarray images to detect cancerous diseases. Methods: The proposed system consists of t...
متن کاملتحلیل تصاویر ریزآرایه به منظور تشخیص نوع سرطان سینه
Background: Microarray technology is a powerful tool to study and analyze the behavior of thousands of genes simultaneously. Images of microarray have an important role in the detection and treatment of diseases. The aim of this study is to provide an automatic method for the extraction and analysis of microarray images to detect cancerous diseases. Methods: The proposed system consists of t...
متن کاملExtracellular exosomes and preeclampsia: a microarray-based study and functional enrichment analysis
Background: Preeclampsia (PE) is a heterogeneous pregnancy disease which the exact pathophysiology of it is unknown. Recently exosomes have been indicated as a causative factor in the pathogenesis of PE. The aim of the study was to investigate in microarray library data to extract the differentially expressed genes (DEGs) in PE and to perform a functional enrichment analysis to predict the rol...
متن کاملMining Microarray Datasets Aided by Knowledge Stored in Literature
DNA microarray technology produces large amounts of data. For data mining of these datasets, background information on genes can be helpful. Unfortunately most information is stored in free text. Here, we present an approach to use this information for DNA microarray data mining.
متن کاملAlgorithm for Microarray Cancer Data Analysis using Frequent Pattern Mining and Gene Intervals
Microarray technology allows for the simultaneously monitor of expression levels for thousands of genes or entire genomes. Diseases are often controlled by groups of genes, rather than individual ones. Association rule mining technique in data mining plays a vital role in the field of bioinformatics. In this paper, it has been proposed a novel approach for analysis of microarray gene expression...
متن کاملInformation Extraction from Microarray Data: A Survey of Data Mining Techniques
Nowadays, a huge amount of high throughput molecular data are available for analysis and provide novel and useful insights into complex biological systems, through the acquisition of a high-resolution picture of their molecular status in defined experimental conditions. In this context, microarrays are a powerful tool to analyze thousands of gene expression values with a single experiment. A nu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Methods in molecular medicine
دوره 94 شماره
صفحات -
تاریخ انتشار 2004